PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_834070g0010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 204aa    MW: 23177.9 Da    PI: 9.9694
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_834070g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.6e-0879104227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k   C  + +tGtC+y d+C+F Hgp
  MA_834070g0010  79 KPFVCYQWEATGTCSYRDNCRFPHGP 104
                     5568******************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.977117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-774107IPR000571Zinc finger, CCCH-type
SMARTSM003560.008577104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.07577105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-779104IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MAGKCHSESC RFAHGREELR QPLRNFQRVG ARDEQEIYRT RNAKRLCRDN SAPRDSEVIS  60
VATTSGSSEG VLQKPIYKKP FVCYQWEATG TCSYRDNCRF PHGPRKLAES LEGLKNGDSA  120
TSDWKQNISN LRSHSVFKQG GIPPKPQTQN VDNVTGKNLF AGSTEKSMEI NANRTQAQQG  180
KKRLATWKWP QKISRIYGDW IDED
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20451737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-15C3H family protein